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U83
HUGO Gene Nomenclature Committee
HGNC Approved SymbolHGNC Approved Name
SNORD117small nucleolar RNA, C/D box 117
snoid : SR0000332
Length : 76
Abstract : Homo sapiens C/D box snoRNA U83. This snoRNA was sequenced from a cDNA library of human snoRNAs by Jady and Kiss (2000). U83 has no identified RNA target, although it can guide the methylation of an artificial substrate. It resides in the nucleolar fraction, but, from sedimentation analysis, it is not associated with pre-ribosomal particules. U83 and U84 share the same host gene. U83 has no sequence similarity with the snoRNAs U83A and U83B characterized by Duga et al. (2000). U83 (SNORD117) should not be confused with HBII-108B (SNORD19B), which is incorrectly nammed SNORD117 in Yang et al. (2006) and GenBank file AM413023.
GenBank accession number : AJ243200
Host gene : BAT1 (ATP-dependent RNA helicase of the DEAD protein family)
Click here to see the position on the UCSC Genome Browser
Target RNA : unknown
References :
- Jady, B. E., and Kiss, T. (2000). Characterisation of the U83 and U84 small nucleolar RNAs: two novel 2'-O-ribose methylation guide RNAs that lack complementarities to ribosomal RNAs. Nucleic Acids Res, 28, 1348-1354.
- Duga,S., Asselta,R., Malcovati,M., Tenchini,M.L., Ronchi,S. and Simonic,T. The intron-containing L3 ribosomal protein gene (RPL3): sequence analysis and identification of U43 and of two novel intronic small ncleolar RNAs. Biochim. Biophys. Acta 1490 (3), 225-236 (2000)
- Yang,J.H., Zhang,X.C., Huang,Z.P., Zhou,H., Huang,M.B., Zhang,S.,Chen,Y.Q. and Qu,L.H. (2006) snoSeeker: an advanced computational package for screening of guide and orphan snoRNA genes in the human genome. Nuc. Acids Res. 34:5112-5123
Sequence :
Phylogenic conservation: Alignment
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